Fix Spigot annotation mistakes

while some of these may of been true, they are extreme cases and cause
a ton of noise to plugin developers.

Use ApiStatus.Internal instead of Deprecated for actual internal API
that continues to have use (internally).

These do not help plugin developers if they bring moise noise than value.

paper-api/src/main/java/org/bukkit/Server.java

@@ -744,9 +744,8 @@ public interface Server extends PluginMessageRecipient, net.kyori.adventure.audi
      *
      * @param id the id of the map to get
      * @return a map view if it exists, or null otherwise
-     * @deprecated Magic value
      */
-    @Deprecated(since = "1.6.2")
+    // @Deprecated(since = "1.6.2") // Paper - Not a magic value
     @Nullable
     public MapView getMap(int id);
 
@@ -813,8 +812,14 @@ public interface Server extends PluginMessageRecipient, net.kyori.adventure.audi
      * Returns the primary logger associated with this server instance.
      *
      * @return Logger associated with this server
+     * @see org.bukkit.plugin.Plugin#getSLF4JLogger()
+     * @apiNote This logger is for the Minecraft server software, not for specific plugins. You should
+     * use a logger for a specific plugin, either via {@link org.bukkit.plugin.Plugin#getSLF4JLogger()}
+     * or {@link org.bukkit.plugin.Plugin#getLogger()} or create a specific logger for a class via slf4j.
+     * That way, log messages contain contextual information about the source of the message.
      */
     @NotNull
+    @org.jetbrains.annotations.ApiStatus.Internal // Paper - internalize Bukkit#getLogger
     public Logger getLogger();
 
     /**
@@ -1151,10 +1156,8 @@ public interface Server extends PluginMessageRecipient, net.kyori.adventure.audi
      * @param name the name the player to retrieve
      * @return an offline player
      * @see #getOfflinePlayer(java.util.UUID)
-     * @deprecated Persistent storage of users should be by UUID as names are no longer
-     *             unique past a single session.
      */
-    @Deprecated(since = "1.7.5")
+    // @Deprecated(since = "1.7.5") // Paper
     @NotNull
     public OfflinePlayer getOfflinePlayer(@NotNull String name);
 
@@ -1672,7 +1675,7 @@ public interface Server extends PluginMessageRecipient, net.kyori.adventure.audi
      *
      * @return the scoreboard manager or null if no worlds are loaded.
      */
-    @Nullable
+    @NotNull // Paper
     ScoreboardManager getScoreboardManager();
 
     /**